Adaptive Physics Refinement for Anatomic Adhesive Dynamics Simulations

Computational Science – ICCS 2025

Aristotle Martin, William Ladd, Runxin Wu & Amanda Randles

Schematic of cell transit through porous microchannel with inset shape comparisons and APR-versus-eFSI trajectory plot.

Summary

Explicitly simulating the transport of circulating tumor cells (CTCs) across anatomical scales with submicron precision—necessary for capturing ligand-receptor interactions between CTCs and endothelial walls—remains infeasible even on modern supercomputers. In this work, we extend the hybrid CPU-GPU adaptive physics refinement (APR) method to couple a moving finely resolved region capturing adhesive dynamics between a cancer cell and nearby endothelium to a bulk fluid domain. We present algorithmic advancements that: enable the window to traverse vessel walls, resolve adhesive interactions within the moving window, and accelerate adhesive computations with GPUs. We provide an in-depth analysis of key implementation challenges, including trade-offs in data movement, memory footprint, and algorithmic complexity. Leveraging the advanced APR techniques introduced in this work, we simulate adhesive cancer cell transport within a large microfluidic device at a fraction of the computational cost of fully explicit models. This result highlights our method’s ability to significantly expand the accessible problem sizes for adhesive transport simulations, enabling more complex and computationally demanding studies.

Citation

Martin, Aristotle, et al. “Adaptive Physics Refinement for Anatomic Adhesive Dynamics Simulations.” International Conference on Computational Science. Cham: Springer Nature Switzerland, 2025.

BibTex

@inproceedings{martin2025adaptive, title={Adaptive Physics Refinement for Anatomic Adhesive Dynamics Simulations}, author={Martin, Aristotle and Ladd, William and Wu, Runxin and Randles, Amanda}, booktitle={International Conference on Computational Science}, pages={268–282}, year={2025}, organization={Springer} }

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